Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PCPG rs35017768 chr1:40520019 C/T 0.000336 174 25.2 28.3 25.17 KM Plot
PCPG rs35021324 chr10:29854488 C/T 5.71E-11 176 25.77 16.83 10.3 KM Plot
PCPG rs35028238 chr2:24315345 C/CT 0.000114 177 25.4 26.92 17.43 KM Plot
PCPG rs35031161 chr2:242596439 A/G 6.19E-11 175 25.87 24.85 10.3 KM Plot
PCPG rs35033542 chr14:74583549 C/A 4.4E-7 177 25.4 27.78 7.4 KM Plot
PCPG rs35039887 chr2:24333701 A/G 0.000114 177 25.4 26.92 17.43 KM Plot
PCPG rs35045018 chr14:74585102 G/A 4.4E-7 177 25.4 27.78 7.4 KM Plot
PCPG rs35052325 chr3:39171676 C/T 8.0E-6 174 25.67 21.95 19.87 KM Plot
PCPG rs35052753 chr14:74488992 T/G 3.72E-7 178 25.28 28.38 7.4 KM Plot
PCPG rs35054095 chr17:50303521 C/T 3.24E-5 178 26.57 27.2 14.43 KM Plot
PCPG rs35056340 chr2:2752889 CA/C 2.96E-5 170 25.67 23.43 21.68 KM Plot
PCPG rs35059499 chr2:24340373 C/T 0.000114 177 25.4 26.92 17.43 KM Plot
PCPG rs35076015 chr3:53026366 C/T 6.73E-6 176 25.28 26.05 11.78 KM Plot
PCPG rs35088691 chr15:43064763 T/C 2.28E-13 176 25.53 24.62 25.17 KM Plot
PCPG rs35088714 chr14:74334205 TA/T 1.12E-5 175 25.47 28.3 10.43 KM Plot